Tellipsoid: Exploiting inter-gene correlation for improved detection of differential gene expression

Motivation: Algorithms for differential analysis of microarray data are vital to modern biomedical research. Their accuracy strongly depends on effective treatment of inter-gene correlation. Correlation is ordinarily accounted for in terms of its effect on significance cut-offs. In this paper it is shown that correlation can, in fact, be exploited {to share information across tests}, which, in turn, can increase statistical power. Results: Vastly and demonstrably improved differential analysis approaches are the result of combining identifiability (the fact that in most microarray data sets, a large proportion of genes can be identified a priori as non-differential) with optimization criteria that incorporate correlation. As a special case, we develop a method which builds upon the widely used two-sample t-statistic based approach and uses the Mahalanobis distance as an optimality criterion. Results on the prostate cancer data of Singh et al. (2002) suggest that the proposed method outperforms all published approaches in terms of statistical power. Availability: The proposed algorithm is implemented in MATLAB and in R. The software, called Tellipsoid, and relevant data sets are available at http://www.egr.msu.edu/~desaikeyComment: 19 pages, Submitted to Bioinformatic

2013 Convocation

Prelude Music: Jonathan Besancon, IMSA World Language Faculty Member Welcome: Robert Hernandez, Director of Student Affairs Pledge of Allegiance: Anthony Marquez, Student Council President Opening Remarks: Catherine C. Veal, IMSA President; Branson Lawrence Jr., IMSA Principal Featured Piece: Alan Shramuk, 2012 IMSA Graduate Keynote Speaker: Jenny Deller, Writer-Director-Producer of the feature film, Future Weather Closing Remarks: Branson Lawrence Jr., IMSA Principa

Feature extraction based on bio-inspired model for robust emotion recognition

Emotional state identification is an important issue to achieve more natural speech interactive systems. Ideally, these systems should also be able to work in real environments in which generally exist some kind of noise. Several bio-inspired representations have been applied to artificial systems for speech processing under noise conditions. In this work, an auditory signal representation is used to obtain a novel bio-inspired set of features for emotional speech signals. These characteristics, together with other spectral and prosodic features, are used for emotion recognition under noise conditions. Neural models were trained as classifiers and results were compared to the well-known mel-frequency cepstral coefficients. Results show that using the proposed representations, it is possible to significantly improve the robustness of an emotion recognition system. The results were also validated in a speaker independent scheme and with two emotional speech corpora.Fil: Albornoz, Enrique Marcelo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Instituto de Investigación en Señales, Sistemas e Inteligencia Computacional. Universidad Nacional del Litoral. Facultad de Ingeniería y Ciencias Hídricas. Instituto de Investigación en Señales, Sistemas e Inteligencia Computacional; ArgentinaFil: Milone, Diego Humberto. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Instituto de Investigación en Señales, Sistemas e Inteligencia Computacional. Universidad Nacional del Litoral. Facultad de Ingeniería y Ciencias Hídricas. Instituto de Investigación en Señales, Sistemas e Inteligencia Computacional; ArgentinaFil: Rufiner, Hugo Leonardo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Santa Fe. Instituto de Investigación en Señales, Sistemas e Inteligencia Computacional. Universidad Nacional del Litoral. Facultad de Ingeniería y Ciencias Hídricas. Instituto de Investigación en Señales, Sistemas e Inteligencia Computacional; Argentin

Class-Discriminative Weighted Distortion Measure for VQ-based Speaker Identification

We consider the distortion measure in vector quantization based speaker identification system. The model of a speaker is a codebook generated from the set of feature vectors from the speakers voice sample. The matching is performed by evaluating the distortions between the unknown speech sample and the models in the speaker database. In this paper, we introduce a weighted distortion measure that takes into account the correlations between the known models in the database. Larger weights are assigned to vectors that have high discriminating power between the speakers and vice versa

Multichannel Online Blind Speech Dereverberation with Marginalization of Static Observation Parameters in a Rao-Blackwellized Particle Filter

Room reverberation leads to reduced intelligibility of audio signals and spectral coloration of audio signals. Enhancement of acoustic signals is thus crucial for high-quality audio and scene analysis applications. Multiple sensors can be used to exploit statistical evidence from multiple observations of the same event to improve enhancement. Whilst traditional beamforming techniques suffer from interfering reverberant reflections with the beam path, other approaches to dereverberation often require at least partial knowledge of the room impulse response which is not available in practice, or rely on inverse filtering of a channel estimate to obtain a clean speech estimate, resulting in difficulties with non-minimum phase acoustic impulse responses. This paper proposes a multi-sensor approach to blind dereverberation in which both the source signal and acoustic channel are directly estimated from the distorted observations using their optimal estimators. The remaining model parameters are sampled from hypothesis distributions using a particle filter, thus facilitating real-time dereverberation. This approach was previously successfully applied to single-sensor blind dereverberation. In this paper, the single-channel approach is extended to multiple sensors. Performance improvements due to the use of multiple sensors are demonstrated on synthetic and baseband speech examples

Determinants of Inapparent and Symptomatic Dengue Infection in a Prospective Study of Primary School Children in Kamphaeng Phet, Thailand

Dengue viruses are a major cause of illness and hospitalizations in tropical and subtropical regions of the world. Severe dengue illness can cause prolonged hospitalization and in some cases death in both children and adults. The majority of dengue infections however are inapparent, producing little clinical illness. Little is known about the epidemiology or factors that determine the incidence of inapparent infection. We describe in a study of school children in Northern Thailand the changing nature of symptomatic and inapparent dengue infection. We demonstrate that the proportion of inapparent dengue infection varies widely among schools during a year and within schools during subsequent years. Important factors that determine this variation are the amount of dengue infection in a given and previous year. Our findings provide an important insight in the virus-host interaction that determines dengue severity, how severe a dengue epidemic may be in a given year, and important clues on how a dengue vaccine may be effective

Gaia GraL: Gaia DR2 Gravitational Lens Systems. VIII. A radio census of lensed systems

We present radio observations of 24 confirmed and candidate strongly lensed quasars identified by the Gaia Gravitational Lenses (GraL) working group. We detect radio emission from 8 systems in 5.5 and 9 GHz observations with the Australia Telescope Compact Array (ATCA), and 12 systems in 6 GHz observations with the Karl G. Jansky Very Large Array (VLA). The resolution of our ATCA observations is insufficient to resolve the radio emission into multiple lensed images, but we do detect multiple images from 11 VLA targets. We have analysed these systems using our observations in conjunction with existing optical measurements, including measuring offsets between the radio and optical positions, for each image and building updated lens models. These observations significantly expand the existing sample of lensed radio quasars, suggest that most lensed systems are detectable at radio wavelengths with targeted observations, and demonstrate the feasibility of population studies with high resolution radio imaging

An investigation of supervector regression for forensic voice comparison on small data

International audienceThe present paper deals with an observer design for a nonlinear lateral vehicle model. The nonlinear model is represented by an exact Takagi-Sugeno (TS) model via the sector nonlinearity transformation. A proportional multiple integral observer (PMIO) based on the TS model is designed to estimate simultaneously the state vector and the unknown input (road curvature). The convergence conditions of the estimation error are expressed under LMI formulation using the Lyapunov theory which guaranties bounded error. Simulations are carried out and experimental results are provided to illustrate the proposed observer